>Q8JH32_CHICK-1 (aa337-380 of ENSGALT00000033729, pfscan)  Gallus_gallus PER2_CHICK-1 (aa396-439 of ENSGALT00000008858, pfscan)  Gallus_gallus 
VDERAVPLLGYLPQDLIGTPVLVHLHPNDRPLMLAIHKKILQY
>ENSGALT00000037540-2 (aa286-333 of ENSGALT00000037540, pfscan)  Gallus_gallus Q9IAI1_CHICK-2 (aa285-332 of ENSGALT00000037539, pfscan)  Gallus_gallus CLOCK_CHICK-2 (aa285-332 of ENSGALT00000022394, pfscan)  Gallus_gallus 
KFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLDNLAKCHEHLMQY
>HIF1A_CHICK-1 (aa80-155 of ENSGALT00000019364, pfscan)  Gallus_gallus 
TEAKMEKELNCFYLKALDGFVMVLSEDGDMIYMSENVNKCMGLTQFDLTGHSVFDFTHPCDHEELREMLTHRNEN
>KCNH1-1 (aa14-94 of ENSGALT00000016057, pfscan)  Gallus_gallus 
QNTFLENIVRRSNDTNFVLGNAQIVDWPIVYSNDGFCKLSGYHRAEVMQKSSTCSFMYGELTDKDTIDKVRQTFENYEMN
>PDE8A-1 (aa165-235 of ENSGALT00000009637, pfscan)  Gallus_gallus 
ACNSLFTALEKSQEAIEITSEDHVIQYVNPAFETVMGYQIGELIGKELTEVPINEKKADFLDTINSCIKI
>NPAS3-1 (aa149-204 of ENSGALT00000016244, pfscan)  Gallus_gallus 
VTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDLLNK
>BMAL1_CHICK-1 (aa150-215 of ENSGALT00000032732, pfscan)  Gallus_gallus 
SDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQ
>SIM1-1 (aa77-140 of ENSGALT00000024939, pfscan)  Gallus_gallus 
GRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGNSIYEYIHPADHDEMTAV
>Q98SN3_CHICK-1 (aa161-235 of ENSGALT00000001095, pfscan)  Gallus_gallus 
DQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVGKLREQLSTSENALTE
>Q9I9E2_CHICK-1 (aa98-161 of ENSGALT00000017616, pfscan)  Gallus_gallus 
LLQALNGFVLVVTADALVFYVSSTIQDYLGFQQSDIIHQSVFELIHTEDRPEFQRQLHWALNP
>ENSGALT00000029129-1 (aa165-239 of ENSGALT00000029129, pfscan)  Gallus_gallus 
DQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVGKLREQLSTSENALTG
>ENSGALT00000010400-2 (aa345-396 of ENSGALT00000010400, pfscan)  Gallus_gallus ARNT2-2 (aa330-381 of ENSGALT00000010398, pfscan)  Gallus_gallus 
NSDGVITFVDPRCISVIGYQPQDLLGKDILEFCHPEDQSHLRESFQQVVKL
>ENSGALT00000014751-1 (aa86-157 of ENSGALT00000014751, pfscan)  Gallus_gallus 
NEEFTQLMLEALDGFLIALTTDGIIIYVSDSVSSLLGHLPSDLVDQNILNFLPEREQSEVYKLLSPRVLMT
>ENSGALT00000037540-1 (aa108-178 of ENSGALT00000037540, pfscan)  Gallus_gallus Q9IAI1_CHICK-1 (aa107-177 of ENSGALT00000037539, pfscan)  Gallus_gallus CLOCK_CHICK-1 (aa107-177 of ENSGALT00000022394, pfscan)  Gallus_gallus 
NEEFTQLMLEALDGFFLAIMTDGNIIYVSESVTPLLEHLPSDLVDQSVFNFIPEGEHSEIYKILSSHLLE
>BMAL1_CHICK-2 (aa354-403 of ENSGALT00000032732, pfscan)  Gallus_gallus 
DGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQT
>Q9W7C6_CHICK-1 (aa84-139 of ENSGALT00000016253, pfscan)  Gallus_gallus 
LKALEGFIAVVTQDGDMIFLSENVNKYMGLTQVELTGHSIFDFTHPCDHEEIREN
>ENSGALT00000021857-1 (aa114-177 of ENSGALT00000021857, pfscan)  Gallus_gallus 
LLESLNGFALVVSADGMIFYASSTIVDYLGFHQTDVMHQNIYDYIHVDDRQDFCRQLHWAMNP
>ENSGALT00000036585-2 (aa262-309 of ENSGALT00000036585, pfscan)  Gallus_gallus NPAS2_CHICK-2 (aa260-307 of ENSGALT00000027080, pfscan)  Gallus_gallus 
KFLFLDHRAPPIIGYLPFEVLGTSGYDYYHIDDLELLARCHEHLMQF
>ENSGALT00000029129-2 (aa371-422 of ENSGALT00000029129, pfscan)  Gallus_gallus Q98SN3_CHICK-2 (aa389-440 of ENSGALT00000001095, pfscan)  Gallus_gallus 
NTEGIFTFIDHRCVATVGYQPQELLGKDIVDFCHPEDQQLLRDSFQQVVKL
>HIF1A_CHICK-2 (aa246-297 of ENSGALT00000019364, pfscan)  Gallus_gallus Q3S4W8_CHICK-2 (aa247-298 of ENSGALT00000037380, pfscan)  Gallus_gallus 
SLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTK
>ENSGALT00000014751-2 (aa264-311 of ENSGALT00000014751, pfscan)  Gallus_gallus 
KFLFLDHRAPPIIGYLPFEVLGTSGYDYYHADDLELLARCHEHLMQF
>ENSGALT00000036585-1 (aa84-154 of ENSGALT00000036585, pfscan)  Gallus_gallus NPAS2_CHICK-1 (aa82-152 of ENSGALT00000027080, pfscan)  Gallus_gallus 
NEEFTQLMLEALDGFIIAVTTGGSIIYVSDSITPLLGHLPCDVLDQNLLNFLPEQEHSEIYKMLSSCMLM
>LOC424033-1 (aa112-175 of ENSGALT00000008831, pfscan)  Gallus_gallus 
LLQALNGFVITVTADGYIFYISPTVQNYLGFHQSDLIYQSIYELIHKDDRAAFHCQLHDAVAS
>NCOA1-1 (aa107-178 of ENSGALT00000026818, pfscan)  Gallus_gallus Q5F393_CHICK-1 (aa107-178 of ENSGALT00000026819, pfscan)  Gallus_gallus 
KESLGPLLLEALDGFFFVVNREGRIVFVSENVTSYLGYNQEELMNTSVYSILHVGDHTEFVKNLLPKSLVN
>KCNH4-1 (aa42-90 of ENSGALT00000005306, pfscan)  Gallus_gallus 
IVYCSDGFCDLTGFARTEVMQKNCSCRFLSGAETSEPVLQRIEKVLEG
>Q3S4W8_CHICK-1 (aa80-148 of ENSGALT00000037380, pfscan)  Gallus_gallus 
TEAKMEKELNCFYLKALDGFVMVLSEDGDMIYMSENVNKCMGLTQFDLTGHSVFDFTHPCDHEELREM
>SIM2-2 (aa233-288 of ENSGALT00000025849, pfscan)  Gallus_gallus 
MFRASLDLKLIFLDSRVTELTGYEPQDLIEKTLYHHVHGCDVFHLRYAHHLLLVK
>Q9DG35_CHICK-1 (aa64-127 of ENSGALT00000008634, pfscan)  Gallus_gallus 
SDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVK
>ENSGALT00000000797-1 (aa229-275 of ENSGALT00000000797, pfscan)  Gallus_gallus 
FLEIDDRAVPLLGYLPQDLIGTSILMYLHPEDRPLMIAIHRKILKF
>SIM1-2 (aa233-270 of ENSGALT00000024939, pfscan)  Gallus_gallus 
MFRASLDMKLIFLDSRVAELTGYEPQDLIEKTLYHHV
>NCOA3-1 (aa123-186 of ENSGALT00000007275, pfscan)  Gallus_gallus 
LLQALDGFLFVVNRDGNIVFVSENVTQYLQYKQEDLVNTSVYGILHEEDRKDFLKNLPKSSVN
>ENSGALT00000010400-1 (aa137-212 of ENSGALT00000010400, pfscan)  Gallus_gallus ARNT2-1 (aa122-197 of ENSGALT00000010398, pfscan)  Gallus_gallus 
TEQELKHLILEAADGFLFVVAAETGRVIYVSDSVTPVLNQPQSEWFGSTLYEQVHPDDVEKLREQLCTSENSMTG
>Q5F376_CHICK-1 (aa118-182 of ENSGALT00000025166, pfscan)  Gallus_gallus Q5F376_CHICK-1 (aa118-182 of ENSGALT00000025163, pfscan)  Gallus_gallus 
MLEALDGFFFVVNPEGNVVFVSENVTQYLRYNQEELMNTSIYSILHVGDHNEFVKILLPKSLVN
>ENSGALT00000009680-1 (aa69-140 of ENSGALT00000009680, pfscan)  Gallus_gallus 
SSQHFLTAARNPNQAIFTVDVTTTEILVANDKACRLLGCSSQELIGQNLSRFISKCNQETWEAVDDEYLET
>ENSGALT00000006888-1 (aa109-172 of ENSGALT00000006888, pfscan)  Gallus_gallus ENSGALT00000006889-1 (aa108-171 of ENSGALT00000006889, pfscan)  Gallus_gallus 
LLQALNGFVLVVTSEGLIFYSSHTIQDYLGFHQTDVMHQSIFKLIHTEDHQEFRRNLHWALNP
>SIM2-1 (aa77-140 of ENSGALT00000025849, pfscan)  Gallus_gallus 
AKELGSHLLQTLDGFVFVVASDGKIMYISETASVHLGLSQVELTGNSIYEYIHPSDHDEMTAV
>ARNTL2-2 (aa363-412 of ENSGALT00000022820, pfscan)  Gallus_gallus BMAL2_CHICK-2 (aa364-413 of ENSGALT00000037361, pfscan)  Gallus_gallus 
DGKFVYVDQRATAILGYLPQELLGTSCYEYCHQDDHNHLAEKHKEVLQN
>ARNTL2-1 (aa163-228 of ENSGALT00000022820, pfscan)  Gallus_gallus BMAL2_CHICK-1 (aa163-228 of ENSGALT00000037361, pfscan)  Gallus_gallus 
KDDELRQLILRAADGFLFVVGCNRGKILFVSESVCKILNYDQTSLIGQSLFDYLHPKDVAKVKEQ
>Q9W7C6_CHICK-2 (aa240-291 of ENSGALT00000016253, pfscan)  Gallus_gallus 
SMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTK